HDFS-6929. NN periodically unlinks lazy persist files with missing replicas from namespace. (Arpit Agarwal)

hadoop-hdfs-project/hadoop-hdfs/CHANGES-HDFS-6581.txt

@@ -18,3 +18,7 @@
 
     HDFS-6927. Initial unit tests for lazy persist files. (Arpit Agarwal)
 
+    HDFS-6929. NN periodically unlinks lazy persist files with missing
+    replicas from namespace. (Arpit Agarwal)
+
+

hadoop-hdfs-project/hadoop-hdfs/src/main/java/org/apache/hadoop/hdfs/server/namenode/FSNamesystem.java

@@ -62,6 +62,8 @@ import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_EDIT_LOG_AUTOROL
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_EDIT_LOG_AUTOROLL_MULTIPLIER_THRESHOLD_DEFAULT;
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_ENABLE_RETRY_CACHE_DEFAULT;
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_ENABLE_RETRY_CACHE_KEY;
+import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_LAZY_PERSIST_FILE_SCRUB_INTERVAL_SEC;
+import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_LAZY_PERSIST_FILE_SCRUB_INTERVAL_SEC_DEFAULT;
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_MAX_OBJECTS_DEFAULT;
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_MAX_OBJECTS_KEY;
 import static org.apache.hadoop.hdfs.DFSConfigKeys.DFS_NAMENODE_NAME_DIR_KEY;
@@ -441,6 +443,10 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
   Daemon nnrmthread = null; // NamenodeResourceMonitor thread
 
   Daemon nnEditLogRoller = null; // NameNodeEditLogRoller thread
+
+  // A daemon to periodically clean up corrupt lazyPersist files
+  // from the name space.
+  Daemon lazyPersistFileScrubber = null;
   /**
    * When an active namenode will roll its own edit log, in # edits
    */
@@ -450,6 +456,12 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
    */
   private final int editLogRollerInterval;
 
+  /**
+   * How frequently we scan and unlink corrupt lazyPersist files.
+   * (In seconds)
+   */
+  private final int lazyPersistFileScrubIntervalSec;
+
   private volatile boolean hasResourcesAvailable = false;
   private volatile boolean fsRunning = true;
   
@@ -857,6 +869,15 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
           DFS_NAMENODE_EDIT_LOG_AUTOROLL_CHECK_INTERVAL_MS_DEFAULT);
       this.inodeId = new INodeId();
       
+      this.lazyPersistFileScrubIntervalSec = conf.getInt(
+          DFS_NAMENODE_LAZY_PERSIST_FILE_SCRUB_INTERVAL_SEC,
+          DFS_NAMENODE_LAZY_PERSIST_FILE_SCRUB_INTERVAL_SEC_DEFAULT);
+
+      if (this.lazyPersistFileScrubIntervalSec == 0) {
+        throw new IllegalArgumentException(
+            DFS_NAMENODE_LAZY_PERSIST_FILE_SCRUB_INTERVAL_SEC + " must be non-zero.");
+      }
+
       // For testing purposes, allow the DT secret manager to be started regardless
       // of whether security is enabled.
       alwaysUseDelegationTokensForTests = conf.getBoolean(
@@ -930,7 +951,7 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
   @VisibleForTesting
   static RetryCache initRetryCache(Configuration conf) {
     boolean enable = conf.getBoolean(DFS_NAMENODE_ENABLE_RETRY_CACHE_KEY,
-        DFS_NAMENODE_ENABLE_RETRY_CACHE_DEFAULT);
+                                     DFS_NAMENODE_ENABLE_RETRY_CACHE_DEFAULT);
     LOG.info("Retry cache on namenode is " + (enable ? "enabled" : "disabled"));
     if (enable) {
       float heapPercent = conf.getFloat(
@@ -1159,6 +1180,12 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
           editLogRollerThreshold, editLogRollerInterval));
       nnEditLogRoller.start();
 
+      if (lazyPersistFileScrubIntervalSec > 0) {
+        lazyPersistFileScrubber = new Daemon(new LazyPersistFileScrubber(
+            lazyPersistFileScrubIntervalSec));
+        lazyPersistFileScrubber.start();
+      }
+
       cacheManager.startMonitorThread();
       blockManager.getDatanodeManager().setShouldSendCachingCommands(true);
     } finally {
@@ -1211,6 +1238,10 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
         ((NameNodeEditLogRoller)nnEditLogRoller.getRunnable()).stop();
         nnEditLogRoller.interrupt();
       }
+      if (lazyPersistFileScrubber != null) {
+        ((LazyPersistFileScrubber) lazyPersistFileScrubber.getRunnable()).stop();
+        lazyPersistFileScrubber.interrupt();
+      }
       if (dir != null && getFSImage() != null) {
         if (getFSImage().editLog != null) {
           getFSImage().editLog.close();
@@ -2683,6 +2714,11 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
           + src + " for client " + clientMachine);
       }
       INodeFile myFile = INodeFile.valueOf(inode, src, true);
+
+      if (myFile.getLazyPersistFlag()) {
+        throw new UnsupportedOperationException(
+            "Cannot append to lazy persist file " + src);
+      }
       // Opening an existing file for write - may need to recover lease.
       recoverLeaseInternal(myFile, src, holder, clientMachine, false);
       
@@ -5001,6 +5037,71 @@ public class FSNamesystem implements Namesystem, FSClusterStats,
     }
   }
 
+  /**
+   * Daemon to periodically scan the namespace for lazyPersist files
+   * with missing blocks and unlink them.
+   */
+  class LazyPersistFileScrubber implements Runnable {
+    private volatile boolean shouldRun = true;
+    final int scrubIntervalSec;
+    public LazyPersistFileScrubber(final int scrubIntervalSec) {
+      this.scrubIntervalSec = scrubIntervalSec;
+    }
+
+    /**
+     * Periodically go over the list of lazyPersist files with missing
+     * blocks and unlink them from the namespace.
+     */
+    private void clearCorruptLazyPersistFiles()
+        throws SafeModeException, AccessControlException,
+        UnresolvedLinkException, IOException {
+
+      List<BlockCollection> filesToDelete = new ArrayList<BlockCollection>();
+
+      writeLock();
+
+      try {
+        final Iterator<Block> it = blockManager.getCorruptReplicaBlockIterator();
+
+        while (it.hasNext()) {
+          Block b = it.next();
+          BlockInfo blockInfo = blockManager.getStoredBlock(b);
+          if (blockInfo.getBlockCollection().getLazyPersistFlag()) {
+            filesToDelete.add(blockInfo.getBlockCollection());
+          }
+        }
+
+        for (BlockCollection bc : filesToDelete) {
+          LOG.warn("Removing lazyPersist file " + bc.getName() + " with no replicas.");
+          deleteInternal(bc.getName(), false, false, false);
+        }
+      } finally {
+        writeUnlock();
+      }
+    }
+
+    @Override
+    public void run() {
+      while (fsRunning && shouldRun) {
+        try {
+          clearCorruptLazyPersistFiles();
+          Thread.sleep(scrubIntervalSec * 1000);
+        } catch (InterruptedException e) {
+          FSNamesystem.LOG.info(
+              "LazyPersistFileScrubber was interrupted, exiting");
+          break;
+        } catch (Exception e) {
+          FSNamesystem.LOG.error(
+              "Ignoring exception in LazyPersistFileScrubber:", e);
+        }
+      }
+    }
+
+    public void stop() {
+      shouldRun = false;
+    }
+  }
+
   public FSImage getFSImage() {
     return fsImage;
   }

hadoop-hdfs-project/hadoop-hdfs/src/main/resources/hdfs-default.xml

@@ -397,6 +397,16 @@
   </description>
 </property>
 
+<property>
+  <name>dfs.namenode.lazypersist.file.scrub.interval.sec</name>
+  <value>300</value>
+  <description>
+    The NameNode periodically scans the namespace for LazyPersist files with
+    missing blocks and unlinks them from the namespace. This configuration key
+    controls the interval between successive scans. Set it to a negative value
+    to disable this behavior.
+  </description>
+</property>
 <property>
   <name>dfs.block.access.token.enable</name>
   <value>false</value>

hadoop-hdfs-project/hadoop-hdfs/src/test/java/org/apache/hadoop/hdfs/server/datanode/fsdataset/impl/TestLazyPersistFiles.java

@@ -204,6 +204,52 @@ public class TestLazyPersistFiles {
     }
   }
 
+  /**
+   * If one or more replicas of a lazyPersist file are lost, then the file
+   * must be discarded by the NN, instead of being kept around as a
+   * 'corrupt' file.
+   */
+  @Test (timeout=300000)
+  public void testLazyPersistFilesAreDiscarded()
+      throws IOException, InterruptedException {
+    startUpCluster(REPL_FACTOR,
+                   new StorageType[] {RAM_DISK, DEFAULT },
+                   (2 * BLOCK_SIZE - 1));   // 1 replica + delta.
+    final String METHOD_NAME = GenericTestUtils.getMethodName();
+    Path path1 = new Path("/" + METHOD_NAME + ".01.dat");
+    Path path2 = new Path("/" + METHOD_NAME + ".02.dat");
+
+    makeTestFile(path1, BLOCK_SIZE, true);
+    makeTestFile(path2, BLOCK_SIZE, false);
+    ensureFileReplicasOnStorageType(path1, RAM_DISK);
+    ensureFileReplicasOnStorageType(path2, DEFAULT);
+
+    // Stop the DataNode and sleep for the time it takes the NN to
+    // detect the DN as being dead.
+    cluster.shutdownDataNodes();
+    Thread.sleep(30000L);
+    assertThat(cluster.getNamesystem().getNumDeadDataNodes(), is(1));
+
+    // Next, wait for the replication monitor to mark the file as
+    // corrupt, plus some delta.
+    Thread.sleep(2 * DFS_NAMENODE_REPLICATION_INTERVAL_DEFAULT * 1000);
+
+    // Wait for the LazyPersistFileScrubber to run, plus some delta.
+    Thread.sleep(2 * LAZY_WRITE_FILE_SCRUBBER_INTERVAL_SEC * 1000);
+
+    // Ensure that path1 does not exist anymore, whereas path2 does.
+    assert(!fs.exists(path1));
+    assert(fs.exists(path2));
+
+    // We should have only one block that needs replication i.e. the one
+    // belonging to path2.
+    assertThat(cluster.getNameNode()
+                      .getNamesystem()
+                      .getBlockManager()
+                      .getUnderReplicatedBlocksCount(),
+               is(1L));
+  }
+
   @Test (timeout=300000)
   public void testLazyPersistBlocksAreSaved()
       throws IOException, InterruptedException {